STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1093dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (195 aa)    
Predicted Functional Partners:
dsat_2633
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
 0.999
dsat_2634
KEGG: dba:Dbac_2884 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 0.998
dsat_2157
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
 0.997
dsat_1094
KEGG: drt:Dret_0269 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II, Nucleotidyl transferase.
  
  
 0.965
dsat_0521
TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase, histidinol-phosphate phosphatase family protein, hydrolase, HAD-superfamily, subfamily IIIA; KEGG: msv:Mesil_0238 D,D-heptose 1,7-bisphosphate phosphatase.
  
 0.951
dsat_1588
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase dimerization; KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; SMART: UDP-glucose/GDP-mannose dehydrogenase.
  
  
 0.951
dsat_1795
PFAM: polysaccharide biosynthesis protein; KEGG: ccr:CC_2426 putative polysaccharide biosynthesis protein.
  
  
 0.950
dsat_0868
KEGG: dsa:Desal_1768 methyltransferase type 12.
  
  
 0.834
dsat_1961
PFAM: NAD-dependent epimerase/dehydratase; KEGG: dma:DMR_38190 NAD-dependent epimerase/dehydratase family protein.
  
 
 0.814
dsat_1966
KEGG: alv:Alvin_1965 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase, UDP-glucose 4-epimerase C-terminal domain; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.774
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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