STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1094KEGG: drt:Dret_0269 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II, Nucleotidyl transferase. (479 aa)    
Predicted Functional Partners:
dsat_0521
TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase, histidinol-phosphate phosphatase family protein, hydrolase, HAD-superfamily, subfamily IIIA; KEGG: msv:Mesil_0238 D,D-heptose 1,7-bisphosphate phosphatase.
  
 
 0.991
dsat_2509
PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I, phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III, phosphoglucomutase/phosphomannomutase, phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: dma:DMR_27100 phosphohexose mutase.
 
 0.986
dsat_1272
KEGG: dba:Dbac_2223 sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated protein, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
 
 0.981
dsat_1665
KEGG: das:Daes_2971 regulatory protein IclR.
  
 
 0.968
dsat_1093
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.965
dsat_0762
PFAM: polysaccharide biosynthesis protein CapD; KEGG: sfu:Sfum_3360 polysaccharide biosynthesis protein CapD.
  
 
 0.954
dsat_1886
PFAM: polysaccharide biosynthesis protein CapD; KEGG: dol:Dole_1302 polysaccharide biosynthesis protein CapD.
  
 
 0.954
pgi
KEGG: dma:DMR_22840 glucose-6-phosphate isomerase; HAMAP : Glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); Belongs to the GPI family.
  
 
 0.935
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
 
 0.932
dsat_1588
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase dimerization; KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; SMART: UDP-glucose/GDP-mannose dehydrogenase.
 
 
 0.931
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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