STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1132PFAM: aminotransferase class I and II; KEGG: dsa:Desal_3407 aspartate aminotransferase. (396 aa)    
Predicted Functional Partners:
dsat_2101
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate/ketoisovalerate oxidoreductase, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein.
  
 
 0.872
dsat_1193
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 0.839
dsat_1217
KEGG: dma:DMR_15780 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.817
sucD
ATP-grasp domain protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
 
 0.792
dsat_2271
KEGG: das:Daes_3132 homocysteine S-methyltransferase; PFAM: homocysteine S-methyltransferase, dihydropteroate synthase DHPS, cobalamin B12-binding domain protein, Methionine synthase B12-binding module cap domain protein; SMART: Methionine synthase B12-binding module cap domain protein.
   
 
 0.788
dsat_0415
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase, Chorismate mutase, type II, amino acid-binding ACT domain-containing protein; KEGG: dvm:DvMF_1749 prephenate dehydratase; SMART: Chorismate mutase.
 
 
 0.777
dsat_1154
Hypothetical protein; KEGG: dsa:Desal_0227 5-enolpyruvylshikimate-3-phosphate synthase-like protein.
    
 0.766
dsat_0431
KEGG: dsa:Desal_0806 DAHP synthetase I/KdsA; PFAM: DAHP synthetase I/KDSA, Chorismate mutase, type II; SMART: Chorismate mutase.
    
  0.734
dsat_1594
KEGG: dma:DMR_17890 aspartate kinase; TIGRFAM: aspartate kinase, monofunctional class, aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase, amino acid-binding ACT domain-containing protein; Belongs to the aspartokinase family.
  
 0.734
dsat_0332
Rhodanese-like protein; KEGG: dsa:Desal_0374 rhodanese domain protein; PFAM: Rhodanese-like protein; SMART: Rhodanese-like protein.
    
 0.730
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.