STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1167SMART: Tetratricopeptide repeat-containing protein; KEGG: dsa:Desal_3029 hypothetical protein. (312 aa)    
Predicted Functional Partners:
dsat_0581
Signal transduction histidine kinase with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.758
dsat_0670
PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, PAS fold-4 domain protein, PAS fold domain protein, histidine kinase A domain protein; KEGG: das:Daes_0516 PAS sensor protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS domain containing protein.
    
 0.755
dsat_2115
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold domain protein, response regulator receiver; KEGG: das:Daes_2894 PAS sensor protein; SMART: ATP-binding region ATPase domain protein, PAS domain containing protein, histidine kinase A domain protein.
    
 0.755
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.728
dsat_1105
TIGRFAM: diguanylate cyclase; PFAM: EAL domain-containing protein, GGDEF domain containing protein, PAS fold-4 domain protein; KEGG: dma:DMR_13960 GGDEF domain protein; SMART: EAL domain-containing protein, GGDEF domain containing protein.
  
    0.512
dsat_2101
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate/ketoisovalerate oxidoreductase, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein.
   
   0.487
dsat_1164
PFAM: ABC-type transporter, integral membrane subunit; KEGG: dma:DMR_45590 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.444
dsat_1165
PFAM: ABC-type transporter, integral membrane subunit; KEGG: dma:DMR_45580 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.444
dsat_1166
KEGG: dma:DMR_45570 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related protein; SMART: AAA ATPase.
       0.444
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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