STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1235PFAM: Cupin 2 conserved barrel domain protein; KEGG: dao:Desac_1708 Cupin 2 conserved barrel domain protein. (105 aa)    
Predicted Functional Partners:
dsat_1094
KEGG: drt:Dret_0269 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II, Nucleotidyl transferase.
  
  0.707
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.706
dsat_0252
PFAM: Carboxymuconolactone decarboxylase; KEGG: dba:Dbac_0462 carboxymuconolactone decarboxylase.
 
  
 0.705
dsat_0745
PFAM: protein of unknown function DUF1566; KEGG: dba:Dbac_0168 hypothetical protein.
  
     0.689
dsat_0415
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase, Chorismate mutase, type II, amino acid-binding ACT domain-containing protein; KEGG: dvm:DvMF_1749 prephenate dehydratase; SMART: Chorismate mutase.
  
 
 0.676
dsat_1234
PFAM: nitrite and sulfite reductase 4Fe-4S region; KEGG: drt:Dret_1276 nitrite and sulfite reductase 4Fe-4S region.
 
   
 0.650
dsat_1702
TIGRFAM: adenylosuccinate lyase; PFAM: Lyase 1, N-terminal, Adenylosuccinate lyase; KEGG: dvm:DvMF_1468 adenylosuccinate lyase; SMART: Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.644
dsat_1236
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: das:Daes_1725 iron-sulfur-binding protein.
  
  
 0.641
dsat_1561
KEGG: dvm:DvMF_0347 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase.
    
 0.620
dsat_2382
KEGG: pca:Pcar_0825 nicotinamide mononucleotide adenylyltransferase, OrfX-like.
  
    0.615
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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