STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1297PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0844 cell wall biosynthesis glycosyltransferase-like protein. (318 aa)    
Predicted Functional Partners:
dsat_1299
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0846 glycosyltransferase-like protein.
 
 
  0.868
dsat_1295
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0843 cell wall biosynthesis glycosyltransferase-like protein.
 
    
0.818
dsat_1298
KEGG: dde:Dde_0845 hypothetical protein.
 
    0.817
dsat_0521
TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase, histidinol-phosphate phosphatase family protein, hydrolase, HAD-superfamily, subfamily IIIA; KEGG: msv:Mesil_0238 D,D-heptose 1,7-bisphosphate phosphatase.
  
 0.816
dsat_1302
KEGG: dba:Dbac_2199 eight transmembrane protein EpsH; TIGRFAM: eight transmembrane protein EpsH, Exosortase/Archaeosortase domain; PFAM: Exosortase EpsH-related protein.
 
     0.780
dsat_1296
PFAM: polysaccharide deacetylase; KEGG: hbo:Hbor_07100 deacetylase.
       0.773
dsat_1300
Hypothetical protein.
       0.773
dsat_1301
PFAM: glycosyl transferase group 1; KEGG: swi:Swit_2376 group 1 glycosyl transferase.
  
 
  0.771
dsat_1294
KEGG: gem:GM21_0478 glutamate dehydrogenase (NAD(P)(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase, Glu/Leu/Phe/Val dehydrogenase dimerization region; SMART: Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.757
dsat_1304
TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dba:Dbac_2196 histidine kinase; SMART: ATP-binding region ATPase domain protein.
 
     0.756
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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