STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1336PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rrs:RoseRS_3868 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family. (380 aa)    
Predicted Functional Partners:
dsat_2321
PFAM: oxidoreductase domain protein, transferase hexapeptide repeat containing protein; KEGG: dbr:Deba_2421 oxidoreductase domain protein.
 
 0.984
dsat_1183
PFAM: oxidoreductase domain protein, Oxidoreductase domain-containing protein; KEGG: das:Daes_2344 oxidoreductase domain-containing protein.
 
 0.893
dsat_0762
PFAM: polysaccharide biosynthesis protein CapD; KEGG: sfu:Sfum_3360 polysaccharide biosynthesis protein CapD.
 
 
 0.856
dsat_1886
PFAM: polysaccharide biosynthesis protein CapD; KEGG: dol:Dole_1302 polysaccharide biosynthesis protein CapD.
 
 
 0.855
dsat_2634
KEGG: dba:Dbac_2884 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.808
dsat_1337
KEGG: dba:Dbac_0307 enoyl-(acyl-carrier-protein) reductase NADH.
  
    0.790
dsat_0521
TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase, histidinol-phosphate phosphatase family protein, hydrolase, HAD-superfamily, subfamily IIIA; KEGG: msv:Mesil_0238 D,D-heptose 1,7-bisphosphate phosphatase.
  
  
 0.760
purC
TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; HAMAP : Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dsa:Desal_2021 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.
  
    0.748
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.696
dsat_1665
KEGG: das:Daes_2971 regulatory protein IclR.
  
 
 0.684
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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