STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1377KEGG: dal:Dalk_0240 hypothetical protein. (224 aa)    
Predicted Functional Partners:
dsat_1649
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein, GAF domain protein, ATP-binding region ATPase domain protein; KEGG: dma:DMR_27220 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein, PAC repeat-containing protein, PAS domain containing protein, histidine kinase A domain protein, GAF domain protein.
  
 
  0.723
dsat_0306
Response regulator receiver protein; KEGG: sur:STAUR_6958 sensor protein; PFAM: ATP-binding region ATPase domain protein, response regulator receiver; SMART: response regulator receiver, ATP-binding region ATPase domain protein.
  
 
  0.660
dsat_1168
Hpt protein; KEGG: dde:Dde_1668 sensory box histidine kinase/response regulator; PFAM: Hpt domain protein; SMART: Hpt domain protein.
  
  
  0.619
dsat_1830
KEGG: dsa:Desal_3323 hypothetical protein.
  
     0.593
dsat_1378
Inosine guanosine and xanthosine phosphorylase family; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
       0.590
dsat_2203
MazG family protein; KEGG: dvl:Dvul_1871 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase.
  
 
  0.581
dsat_1382
PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase.
 
     0.508
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
       0.492
dsat_1380
PFAM: OmpA/MotB domain protein, Motility protein B, N-terminal domain; KEGG: dsa:Desal_2844 OmpA/MotB domain protein.
       0.454
dsat_0994
KEGG: dvm:DvMF_2861 import inner membrane translocase subunit Tim44; PFAM: import inner membrane translocase subunit Tim44; SMART: import inner membrane translocase subunit Tim44.
  
     0.426
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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