STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1389Transcriptional regulator, ArgP, LysR family; KEGG: das:Daes_0055 ArgP family transcriptional regulator; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR, LysR substrate-binding protein. (297 aa)    
Predicted Functional Partners:
dsat_1388
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: das:Daes_0054 lysine exporter protein LysE/YggA.
 
   
 0.911
dsat_1870
PFAM: ABC-type transporter, periplasmic subunit family 3; KEGG: sdn:Sden_1071 extracellular solute-binding protein.
  
     0.508
dsat_1843
PFAM: SEC-C motif domain protein; KEGG: ote:Oter_4216 SecC motif-containing protein.
  
     0.409
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.