STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1463PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain; KEGG: dma:DMR_13140 FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain protein. (413 aa)    
Predicted Functional Partners:
dsat_1462
PFAM: protein of unknown function DUF1641; KEGG: dma:DMR_13130 hypothetical protein.
  
    0.875
dsat_0332
Rhodanese-like protein; KEGG: dsa:Desal_0374 rhodanese domain protein; PFAM: Rhodanese-like protein; SMART: Rhodanese-like protein.
   
 0.779
dsat_1860
PFAM: FAD linked oxidase domain-containing protein, protein of unknown function DUF224 cysteine-rich region domain protein, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, FAD linked oxidase domain protein; KEGG: drt:Dret_1131 FAD linked oxidase domain-containing protein.
  
 
 0.741
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 
 0.674
dsat_2589
KEGG: drt:Dret_1739 sulfur relay protein, TusE/DsrC/DsvC family; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein.
 
  
  0.673
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
   0.661
dsat_0458
KEGG: drt:Dret_1421 riboflavin synthase subunit alpha; TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding domain.
   
    0.659
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
   
    0.659
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 
 0.657
dsat_1091
KEGG: mrd:Mrad2831_2101 alpha/beta hydrolase fold.
   
 
 0.639
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.