STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1539KEGG: dma:DMR_23370 hypothetical protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA-like domain-containing protein, DsrE family protein; Belongs to the sulfur carrier protein TusA family. (207 aa)    
Predicted Functional Partners:
dsat_2288
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
   
 0.979
dsat_0090
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dvm:DvMF_0986 2-hydroxyglutaryl-CoA dehydratase D-component.
 
    0.869
dsat_0332
Rhodanese-like protein; KEGG: dsa:Desal_0374 rhodanese domain protein; PFAM: Rhodanese-like protein; SMART: Rhodanese-like protein.
  
 
 0.869
dsat_2182
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, Nitrate reductase gamma subunit; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
 0.853
dsat_0015
PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain, FAD-dependent pyridine nucleotide-disulfide oxidoreductase, pyridine nucleotide-disulfide oxidoreductase dimerization region; KEGG: dps:DP0550 NADH oxidase.
  
 
 0.850
dsat_1869
KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB; TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding protein, elongation factor Tu domain 2 protein, Elongation factor SelB winged helix 3, Elongation factor SelB winged helix 2.
 
   
 0.830
dsat_2558
KEGG: dsa:Desal_0640 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein, AIR synthase related protein.
 
   
 0.819
dsat_1538
TIGRFAM: pseudouridine synthase Rsu; PFAM: pseudouridine synthase, RNA-binding S4 domain protein; KEGG: dma:DMR_23390 pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.
       0.801
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.767
dsat_0171
PFAM: amidoligase enzyme; KEGG: sfu:Sfum_3840 hypothetical protein.
  
 
 0.643
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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