STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1730PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_4182 radical SAM protein. (578 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.690
dsat_0072
PFAM: Adenylate cyclase class-I, N-terminal domain, adenylate cyclase class-I; KEGG: das:Daes_2670 adenylate cyclase.
   
 
  0.650
dsat_1428
PFAM: Adenylate cyclase class-I, N-terminal domain, adenylate cyclase class-I; KEGG: das:Daes_2670 adenylate cyclase.
   
 
  0.650
dsat_1724
KEGG: gvi:gll2182 hypothetical protein.
       0.631
dsat_1723
Hypothetical protein.
       0.623
dsat_1725
PFAM: glycosyl transferase group 1; overlaps another CDS with the same product name.
       0.623
dsat_1726
PFAM: glycosyl transferase group 1; KEGG: gob:Gobs_2215 group 1 glycosyl transferase; overlaps another CDS with the same product name.
       0.623
dsat_1727
PFAM: acylneuraminate cytidylyltransferase; KEGG: das:Daes_0098 acylneuraminate cytidylyltransferase.
       0.623
dsat_1728
Hypothetical protein.
       0.623
dsat_1729
Hypothetical protein.
       0.623
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.