STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1735PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain; KEGG: lip:LIB011 molybdenum cofactor biosynthesis protein. (333 aa)    
Predicted Functional Partners:
dsat_2070
PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain; KEGG: dvu:DVUA0097 radical SAM domain-containing protein.
  
     0.729
dsat_0072
PFAM: Adenylate cyclase class-I, N-terminal domain, adenylate cyclase class-I; KEGG: das:Daes_2670 adenylate cyclase.
  
 
  0.694
dsat_1428
PFAM: Adenylate cyclase class-I, N-terminal domain, adenylate cyclase class-I; KEGG: das:Daes_2670 adenylate cyclase.
  
 
  0.694
dsat_1200
SMART: Transcription regulator, AsnC-type; KEGG: dba:Dbac_2394 putative AsnC family transcriptional regulator.
 
 
 0.693
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.690
dsat_2093
SMART: Transcription regulator, AsnC-type; KEGG: dba:Dbac_3002 putative AsnC family transcriptional regulator.
 
 
 0.677
dsat_1733
Hypothetical protein.
       0.574
dsat_1734
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rxy:Rxyl_1236 NAD-dependent epimerase/dehydratase.
       0.574
dsat_2474
Radical SAM domain protein; KEGG: mac:MA1302 tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein; PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain; SMART: Elongator protein 3/MiaB/NifB.
  
     0.514
dsat_2287
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.441
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.