STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1745Queuosine biosynthesis protein QueD; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein. (129 aa)    
Predicted Functional Partners:
folE2
GTP cyclohydrolase FolE2; Converts GTP to 7,8-dihydroneopterin triphosphate.
 
  
 0.914
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
  
    0.805
dsat_0721
PFAM: Molybdenum cofactor carrier, putative; KEGG: glo:Glov_0284 hypothetical protein.
    
 0.744
dsat_2260
KEGG: dds:Ddes_1250 hypothetical protein; TIGRFAM: NGG1p interacting factor 3 protein, NIF3; PFAM: NGG1p interacting factor 3 protein, NIF3.
    
 0.677
dsat_1741
PFAM: Domain of unknown function DUF3880; KEGG: dvl:Dvul_1632 CgeB family protein.
       0.590
dsat_1742
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: dma:DMR_13680 hypothetical protein.
       0.588
dsat_1743
KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase; PFAM: protein phosphatase 2C domain protein, response regulator receiver; SMART: response regulator receiver, protein phosphatase 2C domain protein.
       0.581
dsat_2624
KEGG: dba:Dbac_1036 cysteine synthase; TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit, Cysteinyl-tRNA synthetase/mycothiol ligase.
  
  
 0.556
dsat_1740
PFAM: glycosyl transferase family 9; KEGG: dvm:DvMF_0249 glycosyl transferase family 9.
       0.554
dsat_2662
PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/nudix family protein; Belongs to the Nudix hydrolase family.
    
  0.548
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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