STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1900KEGG: dal:Dalk_1675 ABC transporter; PFAM: ABC transporter related protein, ABC transporter transmembrane region; SMART: AAA ATPase. (594 aa)    
Predicted Functional Partners:
dsat_1099
KEGG: sfu:Sfum_4031 ABC transporter-like protein; PFAM: ABC transporter transmembrane region, ABC transporter related protein; SMART: AAA ATPase.
 
0.962
dsat_1540
ABC transporter transmembrane region; KEGG: dde:Dde_1960 Lipid A export ATP-binding/permease MsbA; PFAM: ABC transporter transmembrane region, ABC transporter related protein; SMART: AAA ATPase.
 
 
0.959
dsat_1135
PFAM: outer membrane efflux protein; KEGG: dsa:Desal_2621 outer membrane efflux protein.
  
 
 0.913
dsat_0795
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dde:Dde_0549 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.905
dsat_1011
KEGG: dsa:Desal_1519 ABC transporter; PFAM: ABC transporter related protein; SMART: AAA ATPase.
 
    
0.905
dsat_1267
KEGG: dma:DMR_08170 secretion protein HlyD family protein.
  
 0.905
dsat_2507
KEGG: dma:DMR_27130 secretion protein HlyD family protein.
  
 0.905
dsat_1863
TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related protein, CBS domain containing protein; KEGG: dsa:Desal_0676 glycine betaine/L-proline ABC transporter ATPase subunit; SMART: AAA ATPase, CBS domain containing protein.
 
     
0.855
dsat_1792
KEGG: bfa:Bfae_25040 ABC-type multidrug transporter ATPase; PFAM: ABC transporter related protein; SMART: AAA ATPase.
 
  
 0.784
dsat_1898
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpe:RPE_4235 short-chain dehydrogenase/reductase SDR.
 
     0.762
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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