STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1905PFAM: Methyltransferase type 11; KEGG: bpy:Bphyt_1067 methyltransferase type 11. (245 aa)    
Predicted Functional Partners:
dsat_1907
PFAM: UbiA prenyltransferase; KEGG: rle:pRL100313 hypothetical protein.
    
 0.823
dsat_1909
KEGG: cte:CT0759 hypothetical protein.
  
 0.792
dsat_1904
Hypothetical protein; KEGG: sur:STAUR_6041 methyltransferase.
  
 0.786
dsat_1906
Hydrolase; KEGG: pna:Pnap_2974 hydrolase.
       0.773
dsat_1908
KEGG: dol:Dole_2472 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
    0.712
dsat_0896
TIGRFAM: phosphoserine phosphatase SerB, HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: dma:DMR_33050 phosphoserine phosphatase.
   
  0.689
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 
 0.613
dsat_1902
PFAM: dihydrodipicolinate synthetase; KEGG: bac:BamMC406_5966 dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.607
dsat_1903
PFAM: acylneuraminate cytidylyltransferase; KEGG: atm:ANT_06460 putative N-acylneuraminate cytidylyltransferase.
       0.554
dsat_2271
KEGG: das:Daes_3132 homocysteine S-methyltransferase; PFAM: homocysteine S-methyltransferase, dihydropteroate synthase DHPS, cobalamin B12-binding domain protein, Methionine synthase B12-binding module cap domain protein; SMART: Methionine synthase B12-binding module cap domain protein.
    
 0.548
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.