STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1948Phage baseplate assembly protein V; KEGG: rsc:RCFBP_11734 phage baseplate component; TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V. (203 aa)    
Predicted Functional Partners:
dsat_1949
PFAM: GPW/gp25 family protein; KEGG: bcj:BCAS0508 putative phage baseplate protein gpW.
 
 
 0.996
dsat_1947
KEGG: cvi:CV_0416 bacteriophage regulatory protein.
 
  
 0.993
dsat_1941
KEGG: ect:ECIAI39_1961 putative phage tail sheath protein.
 
 
 0.992
dsat_1950
PFAM: Baseplate J family protein; KEGG: pwa:Pecwa_2887 baseplate J family protein.
 
  
 0.989
dsat_1942
KEGG: mca:MCA2918 prophage MuMc02, major tail tube protein; TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein.
 
  
 0.984
dsat_1946
PFAM: tail X family protein; KEGG: cvi:CV_0415 bacteriophage tail fiber protein.
  
  
 0.970
dsat_1945
PFAM: P2 GpU family protein; KEGG: bcj:BCAS0512 hypothetical protein.
  
  
 0.969
dsat_1944
KEGG: gan:UMN179_01630 Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region-containing protein.
 
  
 0.963
dsat_1951
PFAM: tail protein I; KEGG: cvi:CV_0428 bacteriophage tail fiber protein.
  
  
 0.950
dsat_0162
PFAM: GPW/gp25 family protein; KEGG: dde:Dde_1875 Phage baseplate assembly protein W-like.
 
 
 0.948
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.