STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1967KEGG: das:Daes_0715 asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase, glutamine amidotransferase class-II. (641 aa)    
Predicted Functional Partners:
dsat_1968
PFAM: glycosyl transferase group 1; KEGG: das:Daes_0353 group 1 glycosyl transferase.
 
    0.844
dsat_1965
PFAM: glycosyl transferase group 1; KEGG: nde:NIDE2703 putative lipopolysaccharide core biosynthesis glycosyltransferase.
 
    0.832
dsat_1966
KEGG: alv:Alvin_1965 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase, UDP-glucose 4-epimerase C-terminal domain; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.811
dsat_1964
Hypothetical protein.
       0.773
dsat_1293
PFAM: asparagine synthase; KEGG: ote:Oter_3265 asparagine synthase.
  
     0.765
dsat_1193
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 0.764
dsat_1287
PFAM: asparagine synthase; KEGG: dde:Dde_0842 hypothetical protein.
  
  
  0.759
dsat_1594
KEGG: dma:DMR_17890 aspartate kinase; TIGRFAM: aspartate kinase, monofunctional class, aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase, amino acid-binding ACT domain-containing protein; Belongs to the aspartokinase family.
  
 
 0.666
argG
TIGRFAM: argininosuccinate synthase; HAMAP : Argininosuccinate synthase; KEGG: drt:Dret_1729 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.613
pyrB
TIGRFAM: aspartate carbamoyltransferase; HAMAP : Aspartate carbamoyltransferase; KEGG: das:Daes_3196 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain-containing protein, aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.601
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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