STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_2231PFAM: Amidohydrolase 3, D-aminoacylase domain protein; KEGG: dde:Dde_1269 N-acyl-D-amino-acid deacylase. (530 aa)    
Predicted Functional Partners:
dsat_2230
PFAM: peptidase M20, peptidase dimerization domain protein; KEGG: ipo:Ilyop_0128 peptidase M20.
 
    0.949
dsat_2229
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: atm:ANT_04650 pyridoxal-phosphate dependent enzyme.
 
     0.803
dsat_2228
KEGG: hmo:HM1_2697 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
 
     0.715
dsat_1226
PFAM: peptidase M20, peptidase dimerization domain protein; KEGG: dat:HRM2_48770 ArgE.
 
    0.529
dsat_2232
KEGG: dsa:Desal_3128 hypothetical protein.
       0.515
dsat_2233
PFAM: Uncharacterized conserved protein UCP025560; KEGG: dsa:Desal_3129 hypothetical protein.
       0.515
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.