STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_2597KEGG: das:Daes_3016 HI0933 family protein; TIGRFAM: HI0933 family protein; PFAM: HI0933 family protein. (389 aa)    
Predicted Functional Partners:
dsat_2594
PFAM: PhoH family protein; KEGG: dma:DMR_28840 PhoH-like protein.
       0.800
ybeY
Metalloprotease ybeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.799
dsat_2595
TIGRFAM: metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase 7TM extracellular region, metal-dependent phosphohydrolase HD sub domain-containing protein, metal-dependent phosphohydrolase 7TM intracellular region; KEGG: dma:DMR_28850 hypothetical membrane protein; SMART: metal-dependent phosphohydrolase HD region.
       0.773
dsat_2593
PFAM: protein of unknown function DUF814, Fibronectin-binding A domain protein; KEGG: das:Daes_1918 hypothetical protein.
       0.565
dsat_2598
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
       0.524
argG
TIGRFAM: argininosuccinate synthase; HAMAP : Argininosuccinate synthase; KEGG: drt:Dret_1729 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
    0.508
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
       0.496
argH
TIGRFAM: argininosuccinate lyase; HAMAP : Argininosuccinate lyase; KEGG: dvm:DvMF_0048 argininosuccinate lyase; PFAM: Lyase 1, N-terminal.
       0.480
dsat_0498
PFAM: Glyoxalase-like domain; KEGG: lch:Lcho_2227 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.451
dsat_2485
PFAM: Glyoxalase-like domain; KEGG: sus:Acid_5754 glyoxalase.
  
    0.451
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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