STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_2636KEGG: chl:Chy400_0835 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit. (705 aa)    
Predicted Functional Partners:
dsat_2637
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: chl:Chy400_0836 TRAP transporter solute receptor, TAXI family.
    0.969
dsat_0196
KEGG: drt:Dret_0559 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
     0.560
dsat_2188
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pgv:SL003B_1117 Tricarboxylate transporter family protein.
  
     0.546
dsat_0396
KEGG: das:Daes_2939 TRAP dicarboxylate transporter subunit DctM; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
     0.540
dsat_2227
KEGG: sit:TM1040_2750 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
  
     0.524
dsat_2225
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sit:TM1040_2748 tripartite ATP-independent periplasmic transporter DctQ.
  
     0.503
dsat_2186
Recombinase A; KEGG: pgv:SL003B_1119 Recombinase A.
  
     0.485
dsat_0194
PFAM: Extracellular solute-binding protein, family 7; KEGG: dsa:Desal_3221 TRAP dicarboxylate transporter-DctP subunit.
  
     0.443
dsat_0394
PFAM: Extracellular solute-binding protein, family 7; KEGG: das:Daes_2937 family 7 extracellular solute-binding protein.
  
     0.408
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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