STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_2812KEGG: dvu:DVU0437 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (351 aa)    
Predicted Functional Partners:
dsat_2813
PFAM: acriflavin resistance protein; KEGG: dvm:DvMF_1515 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.990
dsat_0387
KEGG: dma:DMR_04340 efflux system protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.
 0.968
dsat_1135
PFAM: outer membrane efflux protein; KEGG: dsa:Desal_2621 outer membrane efflux protein.
 
 0.928
dsat_0781
PFAM: acriflavin resistance protein; KEGG: dsa:Desal_1788 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.864
dsat_0778
PFAM: outer membrane efflux protein; KEGG: dsa:Desal_1790 outer membrane efflux protein.
 
 0.840
dsat_2027
PFAM: acriflavin resistance protein; KEGG: dsa:Desal_3804 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.831
dsat_0796
PFAM: acriflavin resistance protein; KEGG: das:Daes_0173 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.816
dsat_1133
PFAM: acriflavin resistance protein; KEGG: das:Daes_2482 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.811
dsat_0795
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dde:Dde_0549 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.779
dsat_1267
KEGG: dma:DMR_08170 secretion protein HlyD family protein.
 
 
 0.773
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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