STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_2857Hypothetical protein. (123 aa)    
Predicted Functional Partners:
dsat_2856
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: dsa:Desal_3679 fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein, response regulator receiver, helix-turn-helix Fis-type; SMART: response regulator receiver, AAA ATPase.
       0.773
dsat_2858
TIGRFAM: PAS sensor protein, metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain-containing protein, response regulator receiver; KEGG: dsa:Desal_3678 PAS/PAC sensor protein; SMART: response regulator receiver, metal-dependent phosphohydrolase HD region, PAS domain containing protein, PAC repeat-containing protein.
       0.610
dsat_2859
PFAM: NAD-dependent epimerase/dehydratase, domain of unknown function DUF1731; KEGG: das:Daes_0146 hypothetical protein.
       0.483
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.