STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DGI_0744Putative tetratricopeptide repeat family protein. (266 aa)    
Predicted Functional Partners:
DGI_0392
Putative tetratricopeptide domain-containing protein.
 
  
 0.824
DGI_0503
Hypothetical protein.
 
  
 0.824
DGI_0570
Putative response regulator.
 
 
 0.813
DGI_0023
Hypothetical protein.
  
 
   0.806
DGI_1667
Hypothetical protein.
 
 
   0.803
DGI_1489
Putative anti-sigma-28 factor, FlgM family protein.
  
 
   0.799
DGI_0509
Hypothetical protein.
 
   
 0.780
DGI_2561
Putative glycosyl transferase.
 
     0.775
DGI_1488
Hypothetical protein.
  
     0.774
DGI_1079
Putative flagellar basal body protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.773
Your Current Organism:
Desulfovibrio gigas
NCBI taxonomy Id: 1121448
Other names: D. gigas DSM 1382 = ATCC 19364, Desulfovibrio gigas ATCC 19364, Desulfovibrio gigas DSM 1382 = ATCC 19364
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.