STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DGI_2959Putative cobalamin synthesis protein P47K. (259 aa)    
Predicted Functional Partners:
DGI_2960
Putative ABC transporter.
 
  
 0.964
DGI_2958
Hypothetical protein.
 
     0.954
hypA
Putative hydrogenase nickel incorporation protein hypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
 
 0.876
echE
EchE.
   
 
 0.755
hypD
Putative hydrogenase expression/formation protein; Belongs to the HypD family.
  
  
 0.740
hynD
hynD.
  
  
 0.737
DGI_2957
Putative Patatin.
       0.554
hydA
NiFe hydrogenase small subunit.
  
  
 0.539
DGI_2961
Hypothetical protein.
       0.519
poR
Putative pyruvate-ferredoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
     
 0.511
Your Current Organism:
Desulfovibrio gigas
NCBI taxonomy Id: 1121448
Other names: D. gigas DSM 1382 = ATCC 19364, Desulfovibrio gigas ATCC 19364, Desulfovibrio gigas DSM 1382 = ATCC 19364
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.