STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DGI_3437Hypothetical protein. (584 aa)    
Predicted Functional Partners:
dnaK
Putative molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.746
DGI_0695
Putative glycosyl transferase group family protein.
 
 
 0.742
alaS
Putative alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.740
DGI_3142
Hypothetical protein.
  
 0.736
rpoA
Putative DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.725
DGI_3202
Putative multi-sensor signal transduction histidine kinase.
 
 
 
 0.725
rpoB
Putative DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.718
DGI_0384
Putative glycosyl transferase family 2.
 
 
 0.716
tmcD
Putative TmC complex protein, subunit D.
   
 0.711
DGI_2526
Hypothetical protein.
   
 0.711
Your Current Organism:
Desulfovibrio gigas
NCBI taxonomy Id: 1121448
Other names: D. gigas DSM 1382 = ATCC 19364, Desulfovibrio gigas ATCC 19364, Desulfovibrio gigas DSM 1382 = ATCC 19364
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.