STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA90589.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
SKA90581.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
       0.714
SKA90576.1
Pilus assembly protein CpaB.
       0.689
SKA90570.1
Prepilin peptidase CpaA; Belongs to the peptidase A24 family.
       0.627
SKA90598.1
Pilus assembly protein CpaE.
       0.586
SKA90608.1
Pilus assembly protein CpaF.
       0.586
SKA90616.1
Tight adherence protein B.
       0.532
SKA90624.1
Tight adherence protein C.
       0.521
SKA90631.1
Sporulation related domain-containing protein.
       0.433
Your Current Organism:
Desulfovibrio gracilis
NCBI taxonomy Id: 1121449
Other names: D. gracilis DSM 16080, Desulfovibrio gracilis DSM 16080
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.