Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CCO23687.1 | yocS | DESAM_21410 | DESAM_21412 | Histidine kinase. | Uncharacterized sodium-dependent transporter yocS. | 0.441 |
CCO23690.1 | yocS | DESAM_21413 | DESAM_21412 | Homologs of previously reported genes of unknown function. | Uncharacterized sodium-dependent transporter yocS. | 0.507 |
glgB | yocS | DESAM_21650 | DESAM_21412 | 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | Uncharacterized sodium-dependent transporter yocS. | 0.407 |
putP | yocS | DESAM_22418 | DESAM_21412 | Proline permease; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Uncharacterized sodium-dependent transporter yocS. | 0.403 |
yocS | CCO23687.1 | DESAM_21412 | DESAM_21410 | Uncharacterized sodium-dependent transporter yocS. | Histidine kinase. | 0.441 |
yocS | CCO23690.1 | DESAM_21412 | DESAM_21413 | Uncharacterized sodium-dependent transporter yocS. | Homologs of previously reported genes of unknown function. | 0.507 |
yocS | glgB | DESAM_21412 | DESAM_21650 | Uncharacterized sodium-dependent transporter yocS. | 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | 0.407 |
yocS | putP | DESAM_21412 | DESAM_22418 | Uncharacterized sodium-dependent transporter yocS. | Proline permease; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.403 |