STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO24152.1Type VI secretion protein, VC_A0107 family. (160 aa)    
Predicted Functional Partners:
CCO24153.1
Type VI secretion protein, EvpB/VC_A0108 family.
 
 
 0.997
hcpC
Major exported protein.
 
 
 0.990
CCO24165.1
Homologs of previously reported genes of unknown function.
 
 
 0.985
CCO24155.1
Type VI secretion system lysozyme-related protein.
 
  
 0.970
CCO24151.1
Type VI secretion-associated protein, VC_A0119 family.
 
  
 0.967
CCO24159.1
Rhs element Vgr protein.
 
  
 0.963
CCO24156.1
Type VI secretion protein, VC_A0110 family.
 
  
 0.955
CCO24157.1
Type VI secretion protein, VC_A0111 family.
 
  
 0.955
CCO24167.1
Type VI secretion protein, VC_A0114 family.
 
  
 0.947
CCO24168.1
Type IV / VI secretion system protein, DotU family.
 
  
 0.936
Your Current Organism:
Desulfovibrio hydrothermalis
NCBI taxonomy Id: 1121451
Other names: D. hydrothermalis AM13 = DSM 14728, Desulfovibrio hydrothermalis AM13, Desulfovibrio hydrothermalis AM13 = DSM 14728, Desulfovibrio hydrothermalis DSM 14728, Desulfovibrio hydrothermalis DSM 14728 = AM13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.