STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN60164.1Hypothetical protein. (114 aa)    
Predicted Functional Partners:
SHN60155.1
TIGR00375 family protein.
 
     0.837
SHN49452.1
Hypothetical protein.
  
     0.770
SHN68659.1
Hypothetical protein.
  
     0.764
SHN49459.1
Hypothetical protein.
  
     0.760
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.753
SHN69187.1
Hypothetical protein.
  
     0.733
SHN63160.1
Hypothetical protein.
  
     0.731
SHN70988.1
Dissimilatory sulfite reductase D (DsrD).
  
     0.721
SHN70110.1
Hypothetical protein.
  
     0.713
SHN72936.1
Cytochrome c7.
  
     0.709
Your Current Organism:
Desulfovibrio litoralis
NCBI taxonomy Id: 1121455
Other names: D. litoralis DSM 11393, Desulfovibrio litoralis DSM 11393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.