STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN73261.1Inactivated superfamily I helicase. (965 aa)    
Predicted Functional Partners:
SIN73276.1
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).
 
  
 0.983
SIN87853.1
TIGR00375 family protein.
   
  0.765
SIN93164.1
UvrD-like helicase C-terminal domain-containing protein.
   
  0.765
SIN97165.1
Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.
 
     0.765
SIO39137.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
   
  0.765
SIO00962.1
Small ribosomal subunit Rsm22.
  
     0.741
SIN70022.1
4-amino-4-deoxy-L-arabinose transferase.
 
     0.711
SIN87152.1
DNA polymerase III, beta subunit.
 
   
 0.684
SIN73245.1
NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family.
 
     0.673
SIN93375.1
Protein of unknown function.
  
   0.653
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.