STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN73336.1beta-N-acetylhexosaminidase. (380 aa)    
Predicted Functional Partners:
SIO41009.1
CubicO group peptidase, beta-lactamase class C family.
  
 
 0.780
SIN73320.1
N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit.
       0.773
SIO30235.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
   
 
 0.746
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
    
 0.723
SIN89944.1
Transcriptional regulator, LacI family.
    
 0.684
SIO17261.1
Hypothetical protein.
    
 0.673
SIN98744.1
Outer membrane autotransporter barrel domain-containing protein.
    
 0.664
SIO39077.1
Outer membrane autotransporter barrel domain-containing protein.
    
 0.664
SIN75962.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
    
  0.629
SIN97027.1
Lysophospholipase L1.
    
 0.595
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.