STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN79417.1sigma-B regulation protein RsbU (phosphoserine phosphatase). (680 aa)    
Predicted Functional Partners:
SIO30092.1
PAS domain S-box-containing protein.
 
 
 0.981
SIN79452.1
Signal transduction histidine kinase.
 
 
 0.960
SIO16764.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.953
SIO16745.1
Serine/threonine-protein kinase RsbW.
 
 0.952
SIO28716.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 0.951
SIO28729.1
Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.
 
 0.950
SIO26465.1
PAS domain S-box-containing protein.
 
 
 0.949
SIO28809.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 0.946
SIN80151.1
Sensor domain CHASE-containing protein.
 
 
 0.937
SIN73217.1
Hypothetical protein.
  
 0.910
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.