STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN80023.1Prepilin peptidase CpaA. (182 aa)    
Predicted Functional Partners:
SIN80007.1
Pilus assembly protein CpaB.
 
  
 0.992
SIN79892.1
Tight adherence protein B.
 
  
 0.975
SIN79993.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.961
SIN79964.1
TadE-like protein.
 
  
 0.956
SIN79922.1
CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein.
 
  
 0.952
SIN79936.1
Flp pilus assembly protein TadG.
 
  
 0.921
SIN79877.1
Tight adherence protein C.
 
   
 0.917
SIN79906.1
Pilus assembly protein CpaF.
 
   
 0.906
SIN99400.1
Flp pilus assembly protein, ATPase CpaE.
 
  
 0.904
SIN80040.1
Pilus assembly protein Flp/PilA.
  
  
 0.885
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.