STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN98744.1Outer membrane autotransporter barrel domain-containing protein. (1768 aa)    
Predicted Functional Partners:
SIN97027.1
Lysophospholipase L1.
  
 0.904
SIO15565.1
Lysophospholipase L1.
  
 0.904
SIN98771.1
Hypothetical protein.
 
     0.872
SIO39077.1
Outer membrane autotransporter barrel domain-containing protein.
 
 
0.847
SIO01661.1
VCBS repeat-containing protein; Partial gene; manually curated.
 
 
 0.842
SIO34289.1
Hemolysin-type calcium-binding repeat-containing protein.
 
 
 0.841
SIO31007.1
Hypothetical protein.
  
 
 0.803
SIO30959.1
Ca2+-binding protein, RTX toxin-related.
 
 0.792
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.729
SIO29920.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.708
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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