STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO00795.1TPR repeat-containing protein. (347 aa)    
Predicted Functional Partners:
SIN95591.1
Trypsin-like peptidase domain-containing protein.
   
 0.949
SIO26465.1
PAS domain S-box-containing protein.
 
 
 0.783
SIO30092.1
PAS domain S-box-containing protein.
   
 0.778
SIO00819.1
Hypothetical protein.
       0.773
SIN79452.1
Signal transduction histidine kinase.
 
 
 0.762
SIO35873.1
Tetratricopeptide repeat-containing protein.
  
     0.749
SIO00840.1
Probable transcriptional regulator.
       0.741
SIN70438.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
  
  0.740
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
   
 0.706
SIN80151.1
Sensor domain CHASE-containing protein.
   
 0.687
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.