STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO08413.1Outer membrane protein, adhesin transport system. (439 aa)    
Predicted Functional Partners:
SIO08329.1
Membrane fusion protein, adhesin transport system.
 
 0.948
SIO30926.1
Hemolysin D.
 
 0.944
SIO08349.1
ATP-binding cassette, subfamily C, LapB.
 
 
 0.876
SIO08307.1
Transglutaminase-like cysteine proteinase BTLCP.
 
   
 0.813
SIN75011.1
Multidrug resistance efflux pump.
  
 0.774
SIO19572.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.766
SIO41122.1
HlyD family secretion protein.
  
 0.766
SIO30936.1
ATP-binding cassette, subfamily B, HlyB/CyaB.
 
 
 0.709
SIO17738.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.680
SIO17715.1
Multidrug efflux pump.
 
 0.654
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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