STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO10603.1Signal transduction histidine kinase. (939 aa)    
Predicted Functional Partners:
SIO30092.1
PAS domain S-box-containing protein.
 
0.996
SIO12135.1
Signal transduction histidine kinase.
 
0.994
SIO26465.1
PAS domain S-box-containing protein.
 
0.990
SIN79452.1
Signal transduction histidine kinase.
 
0.986
SIN80151.1
Sensor domain CHASE-containing protein.
 0.984
SIO13942.1
PAS domain S-box-containing protein.
 
0.972
SIO12971.1
Cache domain-containing protein.
 
0.970
SIO08762.1
PAS domain S-box-containing protein.
 
 
0.964
SIN80768.1
Response regulator receiver domain-containing protein.
 
 
0.962
SIO31875.1
PAS domain S-box-containing protein.
 
 
0.961
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.