STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO10762.1TRAP-type C4-dicarboxylate transport system, small permease component. (170 aa)    
Predicted Functional Partners:
SIO10744.1
TRAP transporter, DctM subunit.
 
 0.997
SIO10726.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
 0.994
SIO10685.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
     0.878
SIO10705.1
Glycine/D-amino acid oxidase.
 
     0.868
SIO10668.1
Thioredoxin reductase.
 
     0.857
SIO10179.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
     0.767
SIO31908.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.766
SIO10158.1
Thioredoxin reductase.
 
     0.751
SIO10199.1
Glycine/D-amino acid oxidase.
 
     0.734
SIO31935.1
TRAP transporter, DctM subunit.
 
 0.727
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.