STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO26845.1L-lactate dehydrogenase complex protein LldE. (250 aa)    
Predicted Functional Partners:
SIO26829.1
L-lactate dehydrogenase complex protein LldF.
 0.998
SIO26816.1
L-lactate dehydrogenase complex protein LldG.
 
 
 0.981
SIO08561.1
L-lactate dehydrogenase complex protein LldG.
 
 
 0.943
SIO08546.1
Iron-sulfur cluster-binding protein.
 
0.942
SIN70323.1
Coenzyme F420-reducing hydrogenase, delta subunit.
  
 0.813
SIO08720.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.803
SIN73863.1
Glycerol 3-phosphate dehydrogenase (quinone) subunit B.
  
 
 0.760
SIO18487.1
Putative adenylylsulfate reductase-associated electron transfer protein QmoB.
    
 0.732
sucD
Succinate--CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
 
 0.718
SIO17992.1
Glycolate oxidase iron-sulfur subunit.
  
  
  0.712
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.