STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO36848.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
SIO36862.1
Hypothetical protein.
 
    0.933
SIO36776.1
Bacteriophage head to tail connecting protein.
 
    0.882
SIN76993.1
Hyperosmotically inducible protein.
  
     0.731
SIO36878.1
Hypothetical protein.
       0.715
SIO36890.1
Hypothetical protein.
       0.675
SIN76565.1
Chemotaxis protein CheZ.
  
     0.669
SIN72797.1
Hypothetical protein.
 
     0.658
SIO36903.1
Hypothetical protein.
       0.652
SIO11122.1
23S rRNA (cytidine2498-2'-O)-methyltransferase.
  
     0.623
SIN73346.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
  
     0.593
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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