STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO39008.1Kynurenine formamidase. (217 aa)    
Predicted Functional Partners:
SIO08720.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.774
SIN68815.1
Transcriptional regulator, XRE family with cupin sensor.
  
    0.768
SIO31273.1
2-polyprenyl-6-methoxyphenol hydroxylase.
 
  
 0.721
SIN69500.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
    
  0.711
SIO14823.1
Predicted amidohydrolase; Non-canonical start codon; manually curated.
    
 0.681
SIO40518.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.672
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.659
SIO26656.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.629
SIN69516.1
Hypothetical protein.
    
  0.618
SIN78651.1
Pyruvate carboxylase.
     
 0.606
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.