STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE43833.1TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (366 aa)    
Predicted Functional Partners:
SHE43756.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.820
SHE43793.1
TRAP transporter, DctM subunit.
 
  
 0.805
SHE85204.1
TRAP transporter, DctM subunit.
 
  
 0.658
SHE43878.1
Predicted lipoprotein with conserved Yx(FWY)xxD motif.
       0.485
SHE43923.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.455
SHE43965.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
       0.455
Your Current Organism:
Devosia limi
NCBI taxonomy Id: 1121477
Other names: D. limi DSM 17137, Devosia limi DSM 17137
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.