STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE85204.1TRAP transporter, DctM subunit. (437 aa)    
Predicted Functional Partners:
SHE85263.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.902
SHE85233.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.776
SHF61100.1
Tripartite ATP-independent transporter solute receptor, DctP family.
     0.774
SHF84121.1
Tripartite ATP-independent transporter solute receptor, DctP family.
     0.774
SHE85550.1
Tripartite ATP-independent transporter solute receptor, DctP family.
     0.771
SHF49294.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.759
SHE83865.1
Tripartite ATP-independent transporter solute receptor, DctP family.
     0.749
SHF75739.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.727
SHE85453.1
Tripartite ATP-independent transporter, DctM component.
  
     0.704
SHE43833.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.658
Your Current Organism:
Devosia limi
NCBI taxonomy Id: 1121477
Other names: D. limi DSM 17137, Devosia limi DSM 17137
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.