STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000425385_01278Unannotated protein. (620 aa)    
Predicted Functional Partners:
GCA_000425385_02851
Unannotated protein.
 
  
 0.803
GCA_000425385_00403
Unannotated protein.
    
 0.775
GCA_000425385_00564
Unannotated protein.
    
 0.750
GCA_000425385_02847
Unannotated protein.
   
 
 0.749
GCA_000425385_04210
Unannotated protein.
    
 0.744
GCA_000425385_02212
Unannotated protein.
     
 0.731
GCA_000425385_02421
Unannotated protein.
     
 0.716
GCA_000425385_00098
Unannotated protein.
   
 
 0.708
GCA_000425385_00400
Unannotated protein.
   
 
 0.708
GCA_000425385_01700
Unannotated protein.
     
 0.704
Your Current Organism:
Pseudoduganella violaceinigra
NCBI taxonomy Id: 1121480
Other names: Duganella violaceinigra DSM 15887, P. violaceinigra DSM 15887, Pseudoduganella violaceinigra DSM 15887
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.