STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000425385_02910Unannotated protein. (550 aa)    
Predicted Functional Partners:
GCA_000425385_04819
Unannotated protein.
  
     0.706
GCA_000425385_03532
Unannotated protein.
  
 
 0.628
GCA_000425385_00232
Unannotated protein.
  
     0.627
GCA_000425385_00464
Unannotated protein.
  
     0.619
GCA_000425385_05322
Unannotated protein.
  
     0.613
GCA_000425385_05401
Unannotated protein.
  
     0.606
GCA_000425385_03869
Unannotated protein.
  
     0.602
GCA_000425385_01512
Unannotated protein.
  
     0.593
GCA_000425385_00461
Unannotated protein.
  
     0.591
GCA_000425385_02098
Unannotated protein.
 
     0.575
Your Current Organism:
Pseudoduganella violaceinigra
NCBI taxonomy Id: 1121480
Other names: Duganella violaceinigra DSM 15887, P. violaceinigra DSM 15887, Pseudoduganella violaceinigra DSM 15887
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.