STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000373245_02030Unannotated protein. (240 aa)    
Predicted Functional Partners:
GCA_000373245_02029
Unannotated protein.
 
  
 0.962
GCA_000373245_02527
Unannotated protein.
  
 0.957
GCA_000373245_02329
Unannotated protein.
  
 
 0.736
GCA_000373245_01312
Unannotated protein.
     
 0.710
GCA_000373245_01025
Unannotated protein.
    
 0.702
GCA_000373245_00857
Unannotated protein.
    
 0.589
GCA_000373245_04142
Unannotated protein.
    
 0.589
GCA_000373245_03671
Unannotated protein.
  
 
 0.567
GCA_000373245_03981
Unannotated protein.
     
 0.502
GCA_000373245_03675
Unannotated protein.
    
 0.487
Your Current Organism:
Echinicola pacifica
NCBI taxonomy Id: 1121859
Other names: E. pacifica DSM 19836, Echinicola pacifica DSM 19836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.