Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACH50_07770 | ACH50_16470 | GCA_000621185_01919 | GCA_000621185_00240 | Unannotated protein. | Unannotated protein; Belongs to the TPP enzyme family. | 0.700 |
ACH50_07770 | ACH50_19090 | GCA_000621185_01919 | GCA_000621185_04324 | Unannotated protein. | Unannotated protein; Belongs to the TPP enzyme family. | 0.692 |
ACH50_07770 | ACH50_20435 | GCA_000621185_01919 | GCA_000621185_04334 | Unannotated protein. | Unannotated protein. | 0.642 |
ACH50_07770 | ilvA | GCA_000621185_01919 | GCA_000621185_04330 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.891 |
ACH50_07770 | ilvC | GCA_000621185_01919 | GCA_000621185_04328 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.968 |
ACH50_07770 | ilvH | GCA_000621185_01919 | GCA_000621185_01920 | Unannotated protein. | Unannotated protein. | 0.999 |
ACH50_07770 | leuB | GCA_000621185_01919 | GCA_000621185_01916 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.940 |
ACH50_07770 | leuD | GCA_000621185_01919 | GCA_000621185_01914 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.898 |
ACH50_07770 | thrA | GCA_000621185_01919 | GCA_000621185_01861 | Unannotated protein. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.581 |
ACH50_12555 | ilvA | GCA_000621185_03141 | GCA_000621185_04330 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.557 |
ACH50_12555 | ilvC | GCA_000621185_03141 | GCA_000621185_04328 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.751 |
ACH50_12555 | ilvH | GCA_000621185_03141 | GCA_000621185_01920 | Unannotated protein. | Unannotated protein. | 0.961 |
ACH50_12555 | leuB | GCA_000621185_03141 | GCA_000621185_01916 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.621 |
ACH50_12555 | leuD | GCA_000621185_03141 | GCA_000621185_01914 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.627 |
ACH50_12555 | thrA | GCA_000621185_03141 | GCA_000621185_01861 | Unannotated protein. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.581 |
ACH50_16470 | ACH50_07770 | GCA_000621185_00240 | GCA_000621185_01919 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein. | 0.700 |
ACH50_16470 | ACH50_19090 | GCA_000621185_00240 | GCA_000621185_04324 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein; Belongs to the TPP enzyme family. | 0.642 |
ACH50_16470 | ACH50_20435 | GCA_000621185_00240 | GCA_000621185_04334 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein. | 0.702 |
ACH50_16470 | ilvA | GCA_000621185_00240 | GCA_000621185_04330 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.606 |
ACH50_16470 | ilvC | GCA_000621185_00240 | GCA_000621185_04328 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.836 |
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