STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMW_00128HAD superfamily hydrolase. (270 aa)    
Predicted Functional Partners:
OMW_00129
HD protein.
  
  
 0.889
OMW_00130
Hypothetical protein.
     
 0.881
OMW_01327
Hypothetical protein.
    
  0.803
OMW_00131
Hypothetical protein.
     
 0.633
OMW_01173
PTS system mannose/fructose/sorbose-specific IIAB component.
    
  0.484
OMW_01020
Hypothetical protein.
  
 
 
0.458
OMW_01818
Hypothetical protein.
    
  0.401
Your Current Organism:
Enterococcus columbae
NCBI taxonomy Id: 1121865
Other names: E. columbae DSM 7374 = ATCC 51263, Enterococcus columbae ATCC 51263, Enterococcus columbae ATCC 51263 = DMS 7374, Enterococcus columbae CCUG 27894, Enterococcus columbae CIP 103675, Enterococcus columbae DSM 7374, Enterococcus columbae DSM 7374 = ATCC 51263, Enterococcus columbae EnGen0384, Enterococcus columbae LMG 11740, Enterococcus columbae NBRC 100677, Enterococcus columbae NCFB 13013, Enterococcus columbae NCIMB 13013, Enterococcus columbae STR 345
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.