STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msuDMethanesulfonate monooxygenase. (276 aa)    
Predicted Functional Partners:
benC
Benzoate 1,2-dioxygenase electron transfer component.
   
 
 0.794
cofD
2-phospho-L-lactate transferase.
 
   
 0.781
fbiB
Coenzyme F420:L-glutamate ligase.
 
   
 0.771
FEAC_26080
Putative nitroreductase.
  
  
 0.721
cofC
2-phospho-L-lactate guanylyltransferase.
 
   
 0.707
FEAC_03050
Putative metallo-hydrolase.
   
 
  0.695
ssuC
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.652
ssuB
Aliphatic sulfonates import ATP-binding protein SsuB.
  
 
 0.599
FEAC_16880
NMT1/THI5 like protein.
  
 
 0.560
mqnC
Cyclic dehypoxanthine futalosine synthase.
 
   
 0.555
Your Current Organism:
Ferrimicrobium acidiphilum
NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497
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